rs47376001 SNP Detail

Summary

• ID
  rs47376001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138949056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTAAC ATCAAGAGAG
  AACAAGAGCA TAATTATTAT ACATATGTCC CACGGCTATA TGAAGCGATA ATATTGCAGG
  AGGAAAAAAA GGTAAGTTTA AAGGGATATT TCATGAATTT TCTGTGTATG TCTACTATAC
  CTGATGGCTG TGTTACCCAA TGGGTTTTGT AGAAGTAGCT ACAGTACATG TTCACTCTGC
  M
  GTACAGTGGT CACTGGCTCT GCTTGGATAC TTTATCATAA AGGAATAAGC AGGAAGCCCA
  TTCCTGCTTT TGTTATTTAA GTATTGGACA GTGATTTTCT TCAAATATCT TTAAATTGAC
  CTAAGTTTTT CTTTAGGAAG AATAATTCTA GTATTAGGAA CAGTAATTAG GAATAATACT
  AGTATTTTAG AAATAATAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61086180	NES16599429	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47376001					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086180	NES16599429	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138949056 () rs orientation: forward

Symbol	Name	Function Class
Rr398077	regulatory region 398077	1956 bp upstream
Rr586253	regulatory region 586253	1997 bp proximal
Stpg2	sperm tail PG rich repeat containing 2	Intron