rs47378528 SNP Detail

Summary

• ID
  rs47378528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93778585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG TAACGTTTAT TTATTTATAG
  R
  ATAGGATGCT GTTGGGGGGT GGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132628040	ENSMUSSNP5857531	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323810027	CHEV_11_93749073	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47378528					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93778585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	1186 bp distal
Mbtd1	mbt domain containing 1	within coordinates
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	1665 bp downstream
Tssr3641	transcription start site region 3641	1882 bp downstream
Tssr104151	transcription start site region 104151	1835 bp downstream
Tssr104152	transcription start site region 104152	1605 bp downstream
Tssr104153	transcription start site region 104153	1549 bp downstream
Tssr104154	transcription start site region 104154	1525 bp downstream
Tssr104155	transcription start site region 104155	1500 bp downstream
Tssr110109	transcription start site region 110109	1986 bp upstream
Tssr110110	transcription start site region 110110	1619 bp upstream
Tssr110111	transcription start site region 110111	1247 bp upstream
Utp18	UTP18 small subunit processome component	1993 bp upstream