rs47379029 SNP Detail

Summary

• ID
  rs47379029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCATGA AGTAACAGAA
  ACCACGAGGA AAGACCCCTG AGTACAATGC TCTCTGTGTG ATTTGAACAA TCCTTTTTTT
  AATGAGATTT TTTTTTTTAA TGAGTTCATA AGATTGTTGC CCGCTCCTGT CAAAAGTGAG
  ACAAAGGGGT TGGCATACAA AAGATAAGAG AAGGAACAAA TAAGATTGAG TGACTAAAGA
  Y
  CCTTGAGAGT TGAAGAAAAA GCAGCAGAGA GGCCAGCACA TTTCTGGCTC AGGTGTTCAG
  GAAGAACATG GCTAAACTAC CCAGAAAGCC CAACCTGAAA ACCTACAGAA ACAAGATTAC
  TCTTCTGTCA GCTCCAGCTC CAAGGATTTA GAGCCATGAT GAACAGATAG CCAATAGTGC
  CCATGGCCCT TAGACTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251685	ENSMUSSNP5597252	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47379029					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	946 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1273 bp upstream
Tssr37060	transcription start site region 37060	1287 bp upstream
Tssr37061	transcription start site region 37061	1299 bp upstream
Tssr37062	transcription start site region 37062	1332 bp upstream
Tssr41531	transcription start site region 41531	1184 bp downstream
Tssr41532	transcription start site region 41532	1290 bp downstream
Tssr41533	transcription start site region 41533	1376 bp downstream
Tssr41534	transcription start site region 41534	1494 bp downstream