rs47379107 SNP Detail

Summary

• ID
  rs47379107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87957388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAACAGT CTTGGGGTGA
  GTTCTGTGAC AGGCCACTTC ATACTACTTT CTGTTTCCTT GACAAGTGGC GCAGAAGCCT
  CTGGCTTTAG ATTTTGGAGT CTTGTGGAGG TATATTCTAG TGAAGCCATG TATATTCTAG
  AGAAACCCAG TATGAGTGCT GACCTGATTT CCCGTGTCTC TACAAGTTTA TAATAATCGT
  Y
  TGAGTTGGGC ATAGGATGCA CACCTTTAAC CCCCCAGTAC TAGGGAGACA AAGGCCAGCT
  AGGGCTACAC TGAGAAATAA TAAACTCAAA ATTTATTTAT TTAGATCCAG GGTCCCTTTA
  CATAGCCCTG CTATTTATTT AGATCCAGGG TCCCTTTACA TAGCCCTGGC TGTCCTGGAA
  CTCACTCTGT AGACCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60290173	NES15780227	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47379107					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290173	NES15780227	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87957388 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	within coordinates
Tssr146206	transcription start site region 146206	1615 bp downstream
Tssr146207	transcription start site region 146207	472 bp upstream
Tssr146208	transcription start site region 146208	492 bp upstream
Tssr146209	transcription start site region 146209	531 bp upstream
Tssr146210	transcription start site region 146210	605 bp upstream
Tssr146211	transcription start site region 146211	862 bp upstream