rs47379116 SNP Detail

Summary

• ID
  rs47379116
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23591147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT AATCCCAGCA CTTAGGAAGG
  G
  AAGTCAGGAG GCTCACACAA GTTCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321488669	CHEV_5_22891967	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47379116					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23591147 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	960 bp upstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	784 bp proximal
Gm43058	predicted gene 43058	1471 bp downstream
Rr112206	regulatory region 112206	547 bp distal
Rr124896	regulatory region 124896	253 bp proximal
Rr367795	regulatory region 367795	736 bp upstream
Tssr45359	transcription start site region 45359	1112 bp upstream
Tssr45360	transcription start site region 45360	1124 bp upstream
Tssr45361	transcription start site region 45361	1151 bp upstream
Tssr50259	transcription start site region 50259	326 bp downstream
Tssr50260	transcription start site region 50260	736 bp downstream
Tssr50261	transcription start site region 50261	835 bp downstream
Tssr50262	transcription start site region 50262	884 bp downstream