rs47381114 SNP Detail

Summary

• ID
  rs47381114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153537075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATGCTG AGTGTTCTGA
  CCTTCAGACA TCTGAAGGAT TAGTAGCCTA ACATTTCCTG AAAAAAAGTG AGCCTGAGAC
  CACCACCAGT CTGTCACCAC AGGGCCTGGA CAGGGAACTA GGTTGAGATG ACTACCAAGA
  CAGTGCCAGG TAGGCCTGGA CAGGCTCCCA GGACAGGAAG CAAGCCAAAG GCGGGAAGAA
  R
  CCAACCTGGG ACAGCAGGCC CCAGGCAGGA GTGAGCCCAA GACAAATGGC CGCACAGGTG
  GGCCGGTAGA GGAGCTGGCC TGAGATGAAC ACTAATCTGT CGCCCTCCAG GCCTAGAGGG
  TGGGGACAGA TCATGCCCAA GATGACTCCT GCCCTGTGCC ATATTGCACA AGCAGGGCAT
  AGCACTCCTG AGACCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136113972	ENSMUSSNP3913174	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47381114					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153537075 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	146 bp downstream
Rr587767	regulatory region 587767	828 bp distal
Rr587768	regulatory region 587768	685 bp distal
Rr587769	regulatory region 587769	494 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	213 bp distal
Rr587772	regulatory region 587772	372 bp proximal