rs47383046 SNP Detail

Summary

• ID
  rs47383046
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88374208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCTGT AGGGAGCGCT
  CCAGGCTCTG TGCGTTTTTA GTCCAGCTGA AGGGATTTAT TTGCAAACCT TAAGAAATCT
  TGTTTCGGCT CTGCTGAGAA CTTAAGAGAG AGTCTGGAGT CGGTTCCAGC TTTTGTCGCC
  CAAACTTTCA GAATGTTTTA GATCTTTAAC CAAGTTAGTT TGCTTTAGGC TTTTTTTTTG
  G
  GGGGGGGGGG GGGGCAAGTG GTCTACATGG TGTTCCGGAA GAAGTAAAAT AAAACGGGTG
  GAGGTTGTGA TGGATTATAT TGGTTTTGTT TTAGGTCCCA CGAAGTCAAG AAAGATAAAC
  CCCCGAGAGG AATAATCTTT TGTATCTGTG TCTGGTCCCC TTAGCACAAT CTCTCCCCAA
  GGAAAATGTG TTTCTATTCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146187244	ENSMUSSNP4930639	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47383046					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88374208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	135 bp distal
Fbxo11	F-box protein 11	1489 bp upstream
Rr333911	regulatory region 333911	793 bp proximal
Rr333912	regulatory region 333912	1593 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	1483 bp proximal
Rr370332	regulatory region 370332	193 bp downstream
Rr405528	regulatory region 405528	380 bp downstream
Tssr146222	transcription start site region 146222	1979 bp downstream
Tssr146223	transcription start site region 146223	1951 bp downstream
Tssr149795	transcription start site region 149795	1051 bp upstream
Tssr149796	transcription start site region 149796	949 bp upstream
Tssr149797	transcription start site region 149797	907 bp upstream
Tssr149798	transcription start site region 149798	787 bp upstream
Tssr149799	transcription start site region 149799	693 bp upstream