rs47383177 SNP Detail

Summary

• ID
  rs47383177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45512870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATAAGC AGCCAAGGAC
  TCCGGCTGAC CCCTGGATGC ATAGCGCCCA GCCCTGCACA GCAGCCAGAG GATAGCAAGA
  GCAACCCACT ATCCCTCTCA GACTTTATAT CCCATGCATC AATGGGGAAC AGAAAATCCA
  CAGACCACTG CTGCCCTCCT CAGCCCAAGA CAGCTGCCTA GAAGGTGCCA CATTGTGAGA
  Y
  TGTGGGTGGG TTCTCTGGAA AGAGCTGGGA AGTACCCCTG AGGAGACAGG GAGGGGAAGA
  CACAAGTTAT CTTAAGGGAT GCAGGGTGGG GGTGGCACAT ACAAGGAAGA GGACTCAGAA
  TCAAGAGAGA GAAAAAGTGT ACCCCCGGAA CATGGAGTGA CTAGCATAGC TGGCTGTAGA
  GGGAGAGAAG ATGGACTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136415437	ENSMUSSNP6644173	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47383177					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45512870 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	within coordinates
Rr200399	regulatory region 200399	270 bp distal