rs47383721 SNP Detail

Summary

• ID
  rs47383721
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176718244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT GTCTAGAGGG GCCCTTAAAA
  S
  TCAAGAGTAA TAACTTAGCC CAGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60349120	NES15853511	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	C	G	C		C	G	G	C		G
ss146342226	ENSMUSSNP342972	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
ss320158156	CHEV_1_178820809	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47383721					SNP	G	G	G	G	C	G	C	C	G	C	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349120	NES15853511	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176718244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm37490	predicted gene, 37490			448 bp downstream
Rr423928	regulatory region 423928			193 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant