rs47384444 SNP Detail

Summary

• ID
  rs47384444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176717099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGCGTG ACAGATCAGA
  CTGACCCACT TTGTGTCAGG AAGGAAGAAA GAGAAATGGG AAGACACAGA AGTCTCACTG
  CCCCTTTGGG GCCATGTCCC ATGGCCTGAG ATCTCACACT GGGCCCTATC TCTTTAAGCC
  TCTACCACTT TCAGGTAAAG CTAGGCTGGA GAACATGCCT GTGACATGTG GCACTTTGGA
  R
  CCATGACAGT GACACACTAA TGACTTTGAT CCAGCTGCAC TTGAAAGTCT ATGTGTGGTT
  ATGTATTCCA GCATGTCTCA GCAATCTGTA ACCAAGAAGT GAGACTGAAT GCCCCCCCCC
  TTAGGCAAGC CCTGAAGTTT AAAGTGTCAC ATGCTGAATC TAACACCCTT TACACTCACC
  TCACCAGCCA AGAGTGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60349127	NES15853551	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47384444					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349127	NES15853551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176717099 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	within coordinates
Rr423928	regulatory region 423928	1338 bp proximal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates