CCTCTTTAAA GTGAATTATA ATAAAAATAA ACACAAAACA ATGAGCTAAT AATAAAGCCA ACAAATCTCA ACTACTTTAA GTACAAAAAT ACCCATGTCG CCACCTTCAC AACAGCCCAC CACTCAGCAC AAATTGCCAG CAGCATTCCT CTTTCCCATC AGCCCTACTT CATTCACCCT GCACACTGCA CCAAAGCCAA Y CCTGAACTCA AGCACTGTCC CATACCAGCC CCTCCAGCCT GCTACTCCCA GACCAGCAGA CTTCCCACTC TCACCCCAAC ACCCTAGGCT GAGCTTTCCA CCAACAGGGC TGACAGCATC CTCACCAACA GAACTTAAGC CCCAGGAATT GAAGAGGGGC AACTGAGCAG ATGGATACCT GAGCAATGAA GACCACGTGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52348264 | NES15378185 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
PWD/PhJ |
WSB/EiJ |
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rs47384510 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52348264 | NES15378185 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr12:28684029 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi4510 | CpG island 4510 | 1235 bp proximal | ||||||
Rps7 | ribosomal protein S7 | within coordinates | ||||||
Rr265285 | regulatory region 265285 | within coordinates | ||||||
Rr369505 | regulatory region 369505 | 1767 bp upstream | ||||||
Tssr116014 | transcription start site region 116014 | 1203 bp downstream | ||||||
Tssr116015 | transcription start site region 116015 | 1802 bp downstream | ||||||
Tssr116016 | transcription start site region 116016 | 1813 bp downstream | ||||||
Tssr116017 | transcription start site region 116017 | 1837 bp downstream | ||||||
Tssr116018 | transcription start site region 116018 | 1861 bp downstream | ||||||
Tssr116019 | transcription start site region 116019 | 1884 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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