rs47384966 SNP Detail

Summary

• ID
  rs47384966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6887677 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G GAGAGAGAAA ATGTTTAACT TTCTATTTGC CTAAGTTCTT
  CATTGTTGGA CTGCTGTGGC TGGCTTCTGT CACGCTGGGA ATATGGCAGA CATGAGTAAC
  R
  CAACGCTTCT GGGTGTGAAA CGTCAGCCCT GGAAAGTGCT GACAACAGAG GGCAGGCTGA
  ATCTGCCTGC CCTGCCATCT CACCCAATTG ACAGCTTCTG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60526310	NES16538932	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G	A	G	G
ss145092861	ENSMUSSNP3052239	ENSEMBL	ENSEMBL_Sanger	r	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47384966					SNP	?	A	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60526310	NES16538932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6887677 () rs orientation: reverse

Symbol	Name	Function Class
Gm64560	predicted gene, 64560	1092 bp downstream
Rr521401	regulatory region 521401	1308 bp distal
Rr521402	regulatory region 521402	within coordinates
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates