rs47386302 SNP Detail

Summary

• ID
  rs47386302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52649861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACAAGA GTGACTCTGC
  TATTATTCTA CTCCAAAGTG AGCAGTGTAA ATCCTTAAAT TTCCCTCTCA GGCCAAGTAG
  GTGGGCTTCC GCCCTTGCAT CTGTGTTCCG GATGTTTGGT TACCAGGCAA CGTCTAGCGC
  CTGCCAGACA CCTGTGAAGG GGTGCGGCCC CTGGTCCCCG AGCCTCGGTC CTGGACCTAA
  Y
  CGGCGCCTGC GCAAAATGTG CACAGGCAGG CGTTACCTGC GACCGGCCAC CCGCAGAGAG
  TGGACGGGCG TGGCCGCCCA GTCAAACTCG CGGGTCCAGG CCGGGCAGCG CCTGCTGGGA
  ACAGACTGTA CCCCAGGCTC TAGAGGACCT CCCCAAGCTT TTGCTGCGTT CCTAGAGTAT
  GGTGCCCATA GTTCTGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424031	NES15399341	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	T	T	C	T
ss137738315	ENSMUSSNP1071658	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47386302					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424031	NES15399341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52649861 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	756 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	1563 bp proximal
Gm23296	predicted gene, 23296	1407 bp downstream
Gm24859	predicted gene, 24859	710 bp upstream
Gm35239	predicted gene, 35239	1759 bp upstream
Gm59577	predicted gene, 59577	1347 bp downstream
Rr369517	regulatory region 369517	1606 bp upstream
Rr403283	regulatory region 403283	575 bp upstream
Rr403284	regulatory region 403284	1338 bp upstream
Rr466025	regulatory region 466025	771 bp distal
Rr466026	regulatory region 466026	195 bp distal
Rr466027	regulatory region 466027	1276 bp proximal
Rr466028	regulatory region 466028	1805 bp proximal
Tssr116285	transcription start site region 116285	730 bp upstream
Tssr116286	transcription start site region 116286	707 bp upstream