rs47386675 SNP Detail

Summary

• ID
  rs47386675
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4030813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGACTCC AGAGGGCCCT TCCAGATGCC AGCTCTTCCC
  TTGTTACTGT CATCTGGGCT TCTTCCTGGG GGATAGGGCA GCTCAGTGGT TTCACGGCTG
  M
  TGAGACCATG GCATAGGCAC AAGGACCTCT GAGAGGGAGG AGACCCTGTT CCATGTTTCT
  CCACATCCAG GGCACAAACA GTCTCCGTTG CTTCCTTCCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337161	NES16941197	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47386675					SNP	A	C	C	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337161	NES16941197	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4030813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4371	CpG island 4371	732 bp proximal
Efr3b	EFR3 homolog B	within coordinates
Gm59670	predicted gene, 59670	842 bp upstream
Rr265366	regulatory region 265366	387 bp proximal
Rr369491	regulatory region 369491	1577 bp upstream
Rr403219	regulatory region 403219	552 bp upstream