rs47387181 SNP Detail

Summary

• ID
  rs47387181
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84340516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGGTGA CCAGAGCTAA
  GTAGTGAAAC CCAGGGCCAA ATAAAATAAA GCTAAGCCTG CTGTTCGAAA CCAGAGCAGA
  ACAGAAGGTC CCTACCCAGG GCCTAAGGGT GTTTTTGAGG CACATTCAAC CCATTCAAAA
  TTTATATTTA AGGTTGGAGT AATGATTCAG CAGTTAAGAG CACTTACTGC TCTTGTAGTG
  S
  TCTTAGGTTG GGTTCCCAGC ATCTGCGTGG TGGCTCACAA CTGTCAAAAC ACTCATACAC
  TTGAAAATAA ATCTTTAAAG CCAGGTGTGG AGACTCACAC CTTTAAACTC AATACTAGGG
  AGGCAGAGGC AGGTTGATCT CTGTGAGTTC AAGGCCCATC TGATCTACAT AGTGAGTTTC
  CAGACAGGCA AGGCTATGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145209036	ENSMUSSNP6374958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47387181					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84340516 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	799 bp distal
Rr400423	regulatory region 400423	1193 bp downstream
Rr650632	regulatory region 650632	1554 bp distal
Rr650633	regulatory region 650633	1362 bp distal
Rr650634	regulatory region 650634	861 bp distal
Tssr73444	transcription start site region 73444	1487 bp upstream
Tssr73445	transcription start site region 73445	1474 bp upstream
Tssr73446	transcription start site region 73446	1409 bp upstream
Tssr73447	transcription start site region 73447	1390 bp upstream
Tssr73448	transcription start site region 73448	1369 bp upstream
Tssr73449	transcription start site region 73449	1344 bp upstream
Tssr73450	transcription start site region 73450	1317 bp upstream
Zfand6	zinc finger, AN1-type domain 6	1292 bp upstream