rs47387572 SNP Detail

Summary

• ID
  rs47387572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18092554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA TAGTTCTATT AGTAGCTTGC
  Y
  TGCCTGATAG GCAGGAAACT CTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145227529	ENSMUSSNP1094187	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325312341	CHEV_17_18009256	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47387572					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18092554 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	1771 bp downstream
Rr340653	regulatory region 340653	178 bp distal
Tssr5021	transcription start site region 5021	1142 bp downstream
Tssr5022	transcription start site region 5022	1119 bp downstream
Tssr5023	transcription start site region 5023	585 bp upstream
Tssr142818	transcription start site region 142818	320 bp downstream
Tssr142819	transcription start site region 142819	1447 bp upstream