rs47387675 SNP Detail

Summary

• ID
  rs47387675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26757577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCCTTTT CCTGTCCTAT
  TTCAGACCCT CTGGCTCACT CCCACAGAAG CTAAGCAAAC GAACTGGAAT CAGTGGGTCT
  GCGTCCCCCA CCCCCGGGGG GGGGGCATTT GAATGTTAAG TTAAACCAGG TTTTATACTT
  TGGTGAAAGG AGCAAGGTGG TGAGATTATC CAGTGATCCC TGGAGCATTC TTTCCTGTGT
  R
  TAGTAGGAAC TCTTAATAAA CAGTGTCCTG TTAGAAGCAA ACATGTTAGA CACAGTGAAA
  CTATAGTATA TATTTTAACA AGCCTATACA AGGTATATGG TAGTATTTCC TCGGGGCTGG
  AAAGAAGGCT CAGCAATTAA GAGCTCCTGC TGCTCTTACA GAGGACCCAG GTTTGGTTCC
  CAGCACTCAG CCTGAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554794	NES16569693	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47387675					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554794	NES16569693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26757577 () rs orientation: forward

Symbol	Name	Function Class
Gm50275	predicted gene, 50275	363 bp upstream
Rr405114	regulatory region 405114	253 bp downstream
Tssr143246	transcription start site region 143246	251 bp downstream