rs47387813 SNP Detail

Summary

• ID
  rs47387813
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACAATG TGTGACTGCT
  GCTGAAGGTT CCTTTAGGGC TTTGTCTGGA AGAAACATGG TCTATATTGA CAGAATATCA
  TGCAATAAAT GCAGTCCTGA GACAGAAAAA TGTGAACATG AATTTTTAAA TAATTTCACT
  TTGAACCTAC TGAGCAGGTT CTACTTGCGC AGTAGATACA AGTACAGGTG AAATCCAGTT
  K
  ATAGAAGAGA ACACAGAGAA AATGGGGCTC CAGGAAGAGT GGACTAGATC ACAATCTGTT
  AGGAACTGAA GTTTGACCGG CCTTTCCATA TGGAGATGTC CTTGCTGAAG GCCATGCCAT
  TCTCCCAAGC GGCAGGTAAG TTTAAAGACT CAAAGATGCA TCTTCCTCAC TGTTGGAGAA
  CACAGAAGTG ATCTATGTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936908	NES16189348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47387813					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936908	NES16189348	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259880 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	141 bp downstream
Tssr58809	transcription start site region 58809	471 bp upstream
Tssr58810	transcription start site region 58810	497 bp upstream
Tssr58811	transcription start site region 58811	533 bp upstream
Tssr63019	transcription start site region 63019	1349 bp upstream
Tssr63020	transcription start site region 63020	417 bp upstream
Tssr63021	transcription start site region 63021	339 bp upstream
Tssr63022	transcription start site region 63022	300 bp upstream
Tssr63023	transcription start site region 63023	245 bp upstream
Tssr63024	transcription start site region 63024	147 bp upstream
Tssr63025	transcription start site region 63025	115 bp upstream
Tssr63026	transcription start site region 63026	94 bp upstream
Tssr63027	transcription start site region 63027	56 bp upstream
Tssr63028	transcription start site region 63028	31 bp upstream
Tssr63029	transcription start site region 63029	3 bp upstream
Tssr63030	transcription start site region 63030	11 bp downstream
Tssr63031	transcription start site region 63031	68 bp downstream
Tssr63032	transcription start site region 63032	92 bp downstream
Tssr63033	transcription start site region 63033	117 bp downstream
Tssr63034	transcription start site region 63034	136 bp downstream
Tssr63035	transcription start site region 63035	157 bp downstream
Tssr63036	transcription start site region 63036	211 bp downstream
Tssr63037	transcription start site region 63037	241 bp downstream
Tssr63038	transcription start site region 63038	278 bp downstream
Tssr63039	transcription start site region 63039	337 bp downstream
Tssr63040	transcription start site region 63040	395 bp downstream
Tssr63041	transcription start site region 63041	444 bp downstream
Tssr63042	transcription start site region 63042	469 bp downstream
Tssr63043	transcription start site region 63043	479 bp downstream
Tssr63044	transcription start site region 63044	501 bp downstream
Tssr63045	transcription start site region 63045	592 bp downstream
Tssr63046	transcription start site region 63046	611 bp downstream
Tssr63047	transcription start site region 63047	634 bp downstream
Tssr63048	transcription start site region 63048	662 bp downstream
Tssr63049	transcription start site region 63049	677 bp downstream
Tssr63050	transcription start site region 63050	701 bp downstream
Tssr63051	transcription start site region 63051	753 bp downstream