rs47388181 SNP Detail

Summary

• ID
  rs47388181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9617101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGGAATAAGT TAAGGCCTGC CTTTTTATCT TGACTTTGGA TACTGCGTTA
  Y
  AGTAGATTGG TTTCAACATT TTTGCATTAT TTTTATAACA AAGCTTGTGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148565798	ENSMUSSNP3676995	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T		T
ss319630698	CHEV_1_9536957	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47388181					SNP	T	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9617101 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1072 bp upstream
Cpgi23	CpG island 23	637 bp distal
Rr395961	regulatory region 395961	1480 bp downstream
Rr407596	regulatory region 407596	1678 bp distal
Rr407597	regulatory region 407597	1458 bp distal
Rr407598	regulatory region 407598	1522 bp distal
Rr407599	regulatory region 407599	1294 bp distal
Rr407600	regulatory region 407600	329 bp distal
Rr407601	regulatory region 407601	716 bp distal
Rr407602	regulatory region 407602	645 bp proximal
Rr407603	regulatory region 407603	1083 bp proximal
Rrs1	ribosome biogenesis regulator 1	mRNA-UTR
Tssr5894	transcription start site region 5894	1488 bp downstream
Tssr5895	transcription start site region 5895	1397 bp downstream
Tssr5896	transcription start site region 5896	1381 bp downstream
Tssr5897	transcription start site region 5897	888 bp downstream
Tssr5898	transcription start site region 5898	1173 bp upstream
Tssr5899	transcription start site region 5899	1238 bp upstream