rs47388183 SNP Detail

Summary

• ID
  rs47388183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTGTTCGC CACAGAACCT TTTCCCCGCG GCCGCCACCA
  TCCTGCAGAA GCGCTTCTTC TTTTCTACGA AGTAGTTGCA TCTGCCGTCG ATGGGAAATC
  Y
  GATCGAGGGC GAAGTCGCCG CCGGAGCCTC CATAACGCTG GGTCCTTTTG AAAGCCTGGC
  TCAGCCCAAA GTTGTCAGTC CCCTTTGGTC CCACTTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135670256	ENSMUSSNP7221585	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47388183					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388401 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397965	regulatory region 397965			11 bp upstream
Rr583746	regulatory region 583746			281 bp distal
Rr583747	regulatory region 583747			within coordinates
Rr583748	regulatory region 583748			76 bp proximal
Rr583749	regulatory region 583749			269 bp proximal
Rr583750	regulatory region 583750			437 bp proximal
Sass6	SAS-6 centriolar assembly protein			230 bp upstream
Trmt13	tRNA methyltransferase 13			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr31360	transcription start site region 31360			207 bp upstream
Tssr35316	transcription start site region 35316			64 bp downstream
Tssr35317	transcription start site region 35317			96 bp downstream