rs47390003 SNP Detail

Summary

• ID
  rs47390003
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107455690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATTCAAT TGATATAGAC
  AGTACATTTT TAAATAAGAA TTTTAATTAA GTAGGAAAGA AGAGGTTTAT GGAGAAGAAT
  AAGAACACCT TTGTCTCATG ACTTTGGAAA AGATGAGCAA ATTGGTTCCT TCAGCAGAAT
  CTAGATATAA ATGTATTCAG ATATCTAGAT ATCACTGGAT AACTAGTATC AAGATAGCAA
  A
  ATAAGCAGCA TAAACTACCA GAACAAGCCT CTCCCTAAAC AGGGATGCAT CCCTAGTTAG
  CCTGCTGAGC TGTTGTCAGT CAATGTCAGT GGTCTGTCTA TCTGGAGCCT CTGTCTGATG
  CATTCAGCTA AAAATACAGC TGGAAATGAA TAATCATATC TGCTCTTTAC AGGCTCAGTA
  GGCACATCAA ATTTCCTACC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145102803	ENSMUSSNP4291836	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47390003					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107455690 () rs orientation: forward

Symbol	Name	Function Class
Gm70772	predicted gene, 70772	1148 bp upstream
Rr416649	regulatory region 416649	1501 bp proximal
Serpinb10	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	1067 bp upstream
Tssr8339	transcription start site region 8339	1043 bp upstream
Tssr8340	transcription start site region 8340	1058 bp upstream