rs47391598 SNP Detail

Summary

• ID
  rs47391598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91633910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGCGA TGTCCACATT
  ACATCACAAA AGCCCAATGG CATCAGGTGG CTAAACCCCC AGAATCTGGA AGGCAGACTT
  AGAAAGTCAC CACTGGGAAA GTCACTGTGA ACTCCAAACC TGCTCTTTAG AGGTTGGTAG
  CCCTGCAAGC AGAGTTAAGT CCTGATCTAC AACTTGGTTA CAGTACACAT TGGCATGCTC
  R
  GCCAAGGAGA CGTTAGAGAA GAGCCCGTCT CAACCTCACT GTTACGAGAG TATCAGCCAG
  GAAATCAACA GAAATCAACA GTGATTTGCC AGCTTTGAGA TGTCCTGCTC AACCGAATAG
  GGCTTGAGCC CTAACCTCTG GCACAGCCCT GCGGACTGAG CAGCAGCTGT CTGAATCTGA
  GTGGCTTATG AGAGAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61672042	NES17617429	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47391598					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672042	NES17617429	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91633910 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Rr470642	regulatory region 470642	513 bp proximal
Rr470643	regulatory region 470643	742 bp proximal
Rr470644	regulatory region 470644	1153 bp proximal
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	119 bp downstream
Tssr114595	transcription start site region 114595	1648 bp upstream