rs47392122 SNP Detail

Summary

• ID
  rs47392122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101009017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC TGTACTGGCA AAGTGCCTTT
  Y
  GTATTATAGT TCTTCTCTGC TCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61202769	NES16711398	PERLEGEN	MM_PANEL2	f	SNP	T		T	C		C
ss321627751	CHEV_5_101290170	CHEVERUD	SCREENING_POP	f	SNP		C			C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47392122					SNP	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202769	NES16711398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101009017 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	865 bp upstream
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr378349	regulatory region 378349	1281 bp upstream
Rr615578	regulatory region 615578	within coordinates
Rr615579	regulatory region 615579	497 bp proximal
Rr615580	regulatory region 615580	876 bp proximal
Tssr47495	transcription start site region 47495	866 bp upstream