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rs47392122 SNP Detail
Summary
  • ID
    rs47392122
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:101009017 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTCTC TGTACTGGCA AAGTGCCTTT
    Y
    GTATTATAGT TCTTCTCTGC TCTTA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BTBR T<+> Itpr3/J
LG/J
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
ss61202769 NES16711398 PERLEGEN MM_PANEL2 f SNP T T C C
ss321627751 CHEV_5_101290170 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
BTBR T<+> Itpr3/J
LG/J
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
rs47392122 SNP T C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61202769 NES16711398 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:101009017 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm73351 predicted gene, 73351 865 bp upstream
Gpat3 glycerol-3-phosphate acyltransferase 3 within coordinates
Rr378349 regulatory region 378349 1281 bp upstream
Rr615578 regulatory region 615578 within coordinates
Rr615579 regulatory region 615579 497 bp proximal
Rr615580 regulatory region 615580 876 bp proximal
Tssr47495 transcription start site region 47495 866 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory