GTCTC TGTACTGGCA AAGTGCCTTT Y GTATTATAGT TCTTCTCTGC TCTTA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | BTBR T<+> Itpr3 |
LG/J |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|
ss61202769 | NES16711398 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | C | C | ||
ss321627751 | CHEV_5_101290170 | CHEVERUD | SCREENING_POP | f | SNP | C | C | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | BTBR T<+> Itpr3 |
LG/J |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs47392122 | SNP | T | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61202769 | NES16711398 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr5:101009017 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm73351 | predicted gene, 73351 | 865 bp upstream | ||||||
Gpat3 | glycerol-3-phosphate acyltransferase 3 | within coordinates | ||||||
Rr378349 | regulatory region 378349 | 1281 bp upstream | ||||||
Rr615578 | regulatory region 615578 | within coordinates | ||||||
Rr615579 | regulatory region 615579 | 497 bp proximal | ||||||
Rr615580 | regulatory region 615580 | 876 bp proximal | ||||||
Tssr47495 | transcription start site region 47495 | 866 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|