rs47392141 SNP Detail

Summary

• ID
  rs47392141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCATAGG CTCCTGGGGT
  GCCAGGATGG TGGACTACAG GATAGCAGGA TGGACGACCA CCAGATTGAG GGATAGTATA
  ATACCCAAAA GTGGCTTCAG ATTTGTTCTT AAGTCATATA TAAGGGACCA TGATCTGGGA
  ACACAGATCC AGGCTGCCCC AAATAGCATG TTCTCGCATG GAAACTTGCT TCACTACGTT
  Y
  TTGTAATTGC AGAAGAAAAG GAAGCAATAA ATCAAGGCAT TTTTCCAATG CATTGATGAA
  AACATCACCA AAGACTGTTA GTATTGGGTT TGAGATGGAA GCTGAGAAAA CTCACTTTAG
  AGATGGAAAT TTAAAAATTA AGGCTTTATT TTCTGAGTGC TCAGGGAGGC AGCCAGTTTG
  GGATCTGAAC CACGTACGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134758221	ENSMUSSNP4801316	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47392141					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898859 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	400 bp upstream
Rr575077	regulatory region 575077	30 bp distal
Tssr32964	transcription start site region 32964	462 bp upstream
Tssr32965	transcription start site region 32965	397 bp upstream