rs47392951 SNP Detail

Summary

• ID
  rs47392951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90396654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCTTGA GCCCGGCACT
  CTGACACATG CCTATTATAA TCCCAGCATT CAGGAGGCTA AGGCAAGAGG ACATGTTTGA
  GGCCAGCCGG GACTACATAC TGAGATCTTG TCTCAAGATT AACAAAACCC AAAAGGTAGA
  GGCTCTTTCT TGGATGGACA AGCTGTGATG GAGGTTCTTT AGGAAATAGT CCTGCCGTAC
  R
  CATGTTTCTT GAGGCGGCTA CATGAATGAG TACATAGTGC AAAAAAAATC AAAGGTCTAC
  AGAGACTTTC CTGGAATCTT CTCGTGTCTA CCAGACAAAG CCGTTGGAGA ATTGTACTTG
  TATACTCAGG TCACGGGCCC GTGCTTATTT GCTTGGAGAA CCAGGAGGGT AAACTCCTGA
  ATCCAGCATA GCTCTCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60424450	NES15924382	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47392951					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424450	NES15924382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90396654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	1405 bp proximal
Ilf2	interleukin enhancer binding factor 2	968 bp downstream
Rr397812	regulatory region 397812	1651 bp upstream
Rr580375	regulatory region 580375	1676 bp proximal
Rr580376	regulatory region 580376	1691 bp proximal
Rr580377	regulatory region 580377	1803 bp proximal
Snapin	SNAP-associated protein	mRNA-UTR
Tssr944	transcription start site region 944	1410 bp downstream
Tssr34231	transcription start site region 34231	190 bp upstream
Tssr34232	transcription start site region 34232	1370 bp downstream
Tssr34233	transcription start site region 34233	1435 bp downstream
Tssr34234	transcription start site region 34234	1628 bp downstream