rs47392958 SNP Detail

Summary

• ID
  rs47392958
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG GGGTGGGGCT TGAGAGAGGT
  A
  AAGGCACCCC ACTCACAGAT CCATA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132546894	ENSMUSSNP4509208	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323782843	CHEV_11_88786617	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47392958					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816129 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1027 bp upstream
Tssr110048	transcription start site region 110048	1010 bp upstream
Tssr110049	transcription start site region 110049	955 bp upstream
Tssr110050	transcription start site region 110050	744 bp upstream
Tssr110051	transcription start site region 110051	706 bp upstream
Tssr110052	transcription start site region 110052	688 bp upstream
Tssr110053	transcription start site region 110053	660 bp upstream
Tssr110054	transcription start site region 110054	593 bp upstream