rs47393052 SNP Detail

Summary

• ID
  rs47393052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76375282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAATC CAGGCTGGGT
  CTACCCAGGG CCTACAGGAA GGTGTGTTGG TGAGAGATGG TAAGAAGAGC CAAGAATCAC
  ACATAAGCAA CAGCGTCACC TCGGGAGAGA ATGTGATCGC CATAGAACTG GAATTAGAAA
  ACAAATCTTC TGCTATCCAG ATGGGAACTC CTGAGCTGGA AAAGGAGACT AAGGTGATCA
  Y
  GGAAAAGCCA AGTGTGCAGA CGCAGCGAGC AAGTCTACTT GAGAGTTCAG CAGCAGGCAG
  CCCTCGGTCA GTGACTTCTG CTGCTCCTCC ATCACCAGCA ACCACACATC AACATAGTCT
  GGAAGAACCC AGTAATGGCA TCCGGGAAAG TGCCCCAAGT GGGAAAGATG ACAGGAGAAA
  GACTGCTGCT GAAGAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61648301	NES17599472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C		C	T	T	C		C
ss324105021	CHEV_12_77429495	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47393052					SNP	C	C	C	T	C	C	C	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61648301	NES17599472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76375282 () rs orientation: forward

Symbol	Name	Function Class
Akap5	A kinase anchor protein 5	Coding-NonSynonymous
Tssr113950	transcription start site region 113950	421 bp upstream
Tssr113951	transcription start site region 113951	549 bp upstream
Tssr113952	transcription start site region 113952	766 bp upstream