rs47393215 SNP Detail

Summary

• ID
  rs47393215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:25943763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAACAG CCACCACTGC
  CCTCCTTGGT TGGTTGGATT CATTAAGCCA TTGGTTTCCA GCGCTTTTGT TGGTGGTTGA
  GGTGCCCTGA ATGGCACCTT TCTCCTGTTA CCCGTGTGAT TAGTTTGAGA TGACCTCATG
  CAATTCTGAC ACAGTGAGAC TCATGCTGAT GTCATCAGAT CCTGTTGGCT GCCTTGGTGC
  Y
  TCCTGGCAAT CAGCACCTGC TCTGTGCATC AGCAGAGCTG CTTTCATGGC TTTCTTTCTA
  ATGACGCCCT TTCTTGAGTG TACAAGGACC TTTGGATTTA AGTAAATTGT CTGTGTTGAT
  GTATTAGGCC TTTAGTTCTT AGTGTCTTGG ATACAAACAA CTTGTTGAAA ACTAATCACT
  CCCCTTTTCT ACCAAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61129742	NES16639226	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47393215					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61129742	NES16639226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25943763 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Rr608568	regulatory region 608568	within coordinates
Tssr50419	transcription start site region 50419	1749 bp downstream