rs47394288 SNP Detail

Summary

• ID
  rs47394288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38524938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATTTATG TAGCAAGTAA TGCTAGATCT
  AGCATGTTCT AAATGATCTT GGACTACATA CTGACATATC TGCCAGTCAT TTTGCTAATA
  AATTATTCAA TTCTTTAAAA AAATCCAGAC TTTAATAAAA ATATTGTTAT CTGAGAGGTt
  Y
  tatttattta tttatttatt tatttattta CAGAAAATAA AATTACCAAT AATTTTCATC
  TTGTCTTTTC TTGGGGCAAC AAACTTTGAT TGTGTTTTCT TTTCTTAGAA AGAAAATCAC
  CCATCCAATA AATTCAGGCA TTTGTAAGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134836976	ENSMUSSNP1310366	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320719849	CHEV_3_38369711	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47394288					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38524938 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	Intron
Rr575672	regulatory region 575672	780 bp proximal