rs47394909 SNP Detail

Summary

• ID
  rs47394909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90018215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT AAAGCAAAGT CCTGGGCTGT
  K
  CTGTACTAGG TCAGGGTCGT GTCGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148526627	ENSMUSSNP4522546	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss325274622	CHEV_16_90221572	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47394909					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90018215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	563 bp distal
Rr519073	regulatory region 519073	within coordinates
Rr519074	regulatory region 519074	533 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139276	transcription start site region 139276	1641 bp downstream
Tssr139277	transcription start site region 139277	790 bp downstream
Tssr139278	transcription start site region 139278	738 bp downstream
Tssr139279	transcription start site region 139279	717 bp downstream
Tssr139280	transcription start site region 139280	695 bp downstream
Tssr139281	transcription start site region 139281	686 bp downstream
Tssr139282	transcription start site region 139282	602 bp downstream
Tssr139283	transcription start site region 139283	556 bp downstream