rs47396103 SNP Detail

Summary

• ID
  rs47396103
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106344221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCA CCAATACCGC TGCCCCACCA
  T
  CCCTGCTGCC CACTCAGAGC GTCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136936778	ENSMUSSNP1167626	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323185291	CHEV_9_106369353	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47396103					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106344221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22268	CpG island 22268	930 bp distal
Gpr62	G protein-coupled receptor 62	1084 bp upstream
Tssr91320	transcription start site region 91320	1720 bp upstream
Tssr91321	transcription start site region 91321	1032 bp upstream