rs47396310 SNP Detail

Summary

• ID
  rs47396310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:23348111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATATTTT CAAGTTCATC
  CCTCACTCAG GATGATATTT TCAAGTTCAT CCATTTGCCT GCGAATTTCA TAAAGTCATT
  GTTTTTAATA GCTGAGTAGT ATTCCATTGT ATAAATGTAA CACATTCTCT GTATCCCTTC
  CTCTGTTGAG GGACACCTGG GTTCTTTCCA GCTTCTGGAT ATTATAAATA AGGCTGCTAT
  R
  AACATAGTGG AGCACGTGTT CTTGATACAT GTTGGAGTAT CTTCTGGGTA TATACCCAAG
  AGTGGGTCCT TAGTACTATG CCCAATTTTC TGAGGAACTG CCAGACTCAT TTCCAGAGTG
  GTTGTACCAG TTTGCAATCC CAGCAGCAAT GGAGGAGTGT TCCTCTTCAC ATCCTCGCCA
  GCATCTGCTG TCACCTGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148754295	ENSMUSSNP5427255	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47396310					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:23348111 () rs orientation: forward

Symbol	Name	Function Class
Rr370991	regulatory region 370991	1263 bp downstream