rs47396994 SNP Detail

Summary

• ID
  rs47396994
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30085810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCCAGG CAGACCCCGT
  GCTCTCACCA GGAAGGTGGC CGGCTGTCTC GTAAATATTT TCTATAATGT GTTTTGTCAA
  AGACAGTGGG TGACAATGGG GGTATACTCC ATTTAGTAAA ATGTAACTAT TATGAACTGG
  AAATGGAAAT GGAGAGAAGA AAAGAGATTT GTTCCTTGCA CAAACTAATG TCTCAGAAAG
  W
  TAGAAATTAT TTGCATTTGG ATTCAATTTT GAAAACTATT GAATAATAAT GACAAGTGTA
  ATAATTAGGG CTAAAACTAT ATTTTTATGT AACAGACTGG GAATCTAGCT TTGAACTTTA
  TTTTCTTCTT TTATGTGTGT GAATGTATGT ATGTGTGCCA TCTGCATAAG GGAACCTGAA
  GATATCAGAG GAATGGACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60382605	NES15886959	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47396994					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60382605	NES15886959	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30085810 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1157 bp distal
Rr574711	regulatory region 574711			952 bp distal
Rr574712	regulatory region 574712			746 bp distal
Rr574713	regulatory region 574713			541 bp distal
Rr574714	regulatory region 574714			336 bp distal