rs47399033 SNP Detail

Summary

• ID
  rs47399033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84851220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCCCACA TCCATCAGCA GTGGTGGAGC TTTTAGTAGA
  TTATTGTTTC CCTCCCCCTC TCCTCCTGGT TAGCCCAGTT GTCACCACAG AGGCTTTATC
  Y
  AGCAACTGAT GGAAACAGAT CCAGAGACCC ATAGGGGGAG GAATCAAAGG GGTTAAGAAA
  CAATCAACTG ACCTGGGCTC ACAGACACTG AGCCACCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146139095	ENSMUSSNP1453237	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47399033					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84851220 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	within coordinates
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	531 bp upstream
Tssr149688	transcription start site region 149688	520 bp upstream