rs47401271 SNP Detail

Summary

• ID
  rs47401271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61901918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGATAAAGG
  GACTCAGGCA CATATCTCAA CCTAGTCTCA GGAGGTAAAT GAGGCTCAGG AAGCCTCAGT
  CAGAGTAGCA GACTGAGGTT AAGGGCAGGG TAGAGCCACA GAGGGACTGG AGACCTCATC
  TCAAGGCAGT AGAAGCAGGG AGGTCAATTA GTAACATACC CTGATCATTC ACTTCCTATC
  Y
  GTGTCCTCCT TCCCTTCTGG CAGTCAACTA GTGTCACCTA GATGCAGACA AGGTTGCCCT
  GAAGTCCCCT CTCTGCCCAC CCCCAGGGTG TCCATGGCAG CTAGGGAGCA CCCCAACTCT
  GAATGGCCCC ACAAACCTGT GGGTCCTCTC AGAAGACAGA AGTGCCCACA AGGAAATGTT
  TTCTGTCCTC CATCCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61280107	NES16886527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47401271					SNP	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280107	NES16886527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61901918 () rs orientation: forward

Symbol	Name	Function Class
D10Mit149	DNA segment, Chr 10, Massachusetts Institute of Technology 149	989 bp proximal
Tssr93687	transcription start site region 93687	476 bp upstream