rs47402645 SNP Detail

Summary

• ID
  rs47402645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24338229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGGTCGG AGCCACACTA
  GGGCTGGGAG CTAAGGCTAC TGCCCACTGA GGCAGGACTG CGGGGGTGGC GGGGTTGAAG
  ACTGCAGACA TCAATGATGT ATGTACCTCA GGTCCATACT GGGGGTGGAG CTAGGAGATA
  AGGGGTGGAG TCACAGGTAT AGCTGGCCCG TTGAGCAGTG GTTGTCTAGA TCTCTCAGCA
  R
  GACAGGCTGG CCTAGAACTT GCGATCTTCC TGCCCTAGCT TCCTGAGTAG ACCGTCCTCA
  CCTTTTTGAC CCTTCCTTTT CTGTTTCTGC TCCCCCACAT CCCCTGCAGG CAATGAGAGT
  GCATATGAGC CTAACGGTGC AGAGTGCTAC AGCTGTGTGG GTCTGAGCCG CGAGAAGTGC
  CAGGGCTCCA TGCCGCCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982642	NES16151009	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47402645					SNP	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982642	NES16151009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24338229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	1419 bp distal
Cpgi18555	CpG island 18555	within coordinates
Cpgi18556	CpG island 18556	1225 bp proximal
Gm26550	predicted gene, 26550	888 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Rr172826	regulatory region 172826	1647 bp proximal
Tssr65020	transcription start site region 65020	21 bp downstream
Tssr65021	transcription start site region 65021	7 bp downstream
Tssr65022	transcription start site region 65022	1395 bp upstream