rs47403149 SNP Detail

Summary

• ID
  rs47403149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48662711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCTTT CTGTGTATGT
  GTGTGCGTGT GTGTGTGGTG TGTGTTAATT TCAGGAGCAG GATCAGCTTG AATGGGGCTC
  CATCACTGAA AAGATAATAC CAGAATATAT TGCAATTCTT TGATGCTGTG TCTATAGAGT
  TCTCTGCAAA ACTTTCCAGG TACCTTCATG TAGCCAAGGG ACACAACTTG GCAGTTCAGC
  R
  GGTTAGAGTG GGGTTTGTGA ATCTTGTAAG TTAGAACTTT TCCAAACAGA TGAAGTGGGT
  TTACTTCCTC AAGTCTCTTG AACCACACCT CTTCTACTTT GGCCTAGAAT CATAATTCAC
  AAGAAATTGC TAAACAGTAC ATGTGGGTGG CCAAAATGTA CTGAAAGTGC TTACTCCACT
  GGGGTGTGTT TGTATGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458795	NES16437357	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47403149					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458795	NES16437357	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48662711 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	261 bp upstream
Tssr138680	transcription start site region 138680	129 bp upstream
Tssr138681	transcription start site region 138681	183 bp upstream
Tssr138682	transcription start site region 138682	260 bp upstream
Tssr138683	transcription start site region 138683	306 bp upstream
Tssr138684	transcription start site region 138684	323 bp upstream
Tssr138685	transcription start site region 138685	371 bp upstream
Tssr138686	transcription start site region 138686	495 bp upstream
Tssr138687	transcription start site region 138687	536 bp upstream
Tssr138688	transcription start site region 138688	1195 bp upstream
Tssr138689	transcription start site region 138689	1823 bp upstream
Tssr138690	transcription start site region 138690	1881 bp upstream
Tssr138691	transcription start site region 138691	1918 bp upstream