rs47405315 SNP Detail

Summary

• ID
  rs47405315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139519758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAGAGC GAGATGCACA
  GGCAGGGTGA GAACACTGCA GTTACAGGGG CGGGAAGTCC AGCTGCATTT ATCTGTACCT
  TGTGAACACA CACAAGAATC CGAGGTACCA CAGCAGACTA AGCCAGAGGG CAACATCCAG
  GGAGAACACT GTTGAGATCC AGTGATCATA GCAGGAAGTT AACATCTCAG GAGAGAAGGA
  Y
  TGAGAGTTTT CCTCTCCTTG CTTTTTGTCT AAGACGTTTT ATTTTATTTT ATTTCCCGAA
  AAAAAAAAAA AAAAAAACAG TCCAGGGCAA AGTACAGTGT CAAAGATCAA GTGCAGTATT
  CCAGGAAAAT ATCAATTCAG ACAAAAGCTG TGATGCTATT GATTTTAAAC TGACTAAAAG
  TAGATTCTTA CAAAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61086370	NES16598864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47405315					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086370	NES16598864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139519758 () rs orientation: forward

Symbol	Name	Function Class
Gm43678	predicted gene 43678	1233 bp upstream
Rr74613	regulatory region 74613	1098 bp distal