rs47405384 SNP Detail

Summary

• ID
  rs47405384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72852333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGAGGAG AAGCGACCTG
  GACGTCGCGG ACGGCCGGGC AGGCAGCATG GAGGAGGCGC ACCTGCTCTC CGCTGCCGAC
  GTGCTGCGTC GCTTCTCGGT GACAGCCGAG GGCGGCTTGA GCCTGGAGCA GGTGACCGAC
  GCGCGGGAGC GTTACGGCCC CAACGGTGAG CGTGGGTTCC TGCCCTGCAG TGGGGACCGG
  Y
  TGTCCCCTCC TGACTCGGCA GGAAGCCGGG CTCAGTAAGC CTCTGCAAAT GCGCGTGGGG
  CACCTGGTGG GGCCTCCCGG TCTCCTTCGG GGGAAGAGGA GGCAGGATTT GGCTCTCCAC
  TCCCCATCTC GATGCACCCC TGCAATCCTT AGCCCATTTT ATCCCAGAGC CTTACTGGAT
  GCCCGCACCT GCTGTGCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132417962	ENSMUSSNP2978032	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47405384					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72852333 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	within coordinates
Rr450779	regulatory region 450779	1053 bp distal
Rr450780	regulatory region 450780	328 bp distal
Rr450781	regulatory region 450781	within coordinates
Rr450782	regulatory region 450782	1148 bp proximal
Tssr102861	transcription start site region 102861	1212 bp downstream
Tssr102862	transcription start site region 102862	328 bp downstream
Tssr102863	transcription start site region 102863	279 bp downstream