rs47406498 SNP Detail

Summary

• ID
  rs47406498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GTGGACTGGG GCTGACAACT
  M
  AGGGGCTAGT AGAGTCTTTC CAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148117645	ENSMUSSNP358707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321443279	CHEV_4_155214286	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47406498					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	635 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1007 bp upstream
Tssr40724	transcription start site region 40724	493 bp downstream
Tssr40725	transcription start site region 40725	473 bp downstream
Tssr40726	transcription start site region 40726	415 bp downstream
Tssr40727	transcription start site region 40727	353 bp downstream
Tssr40728	transcription start site region 40728	337 bp downstream
Tssr40729	transcription start site region 40729	924 bp upstream
Tssr40730	transcription start site region 40730	944 bp upstream
Tssr40731	transcription start site region 40731	969 bp upstream
Tssr40732	transcription start site region 40732	991 bp upstream
Tssr40733	transcription start site region 40733	1235 bp upstream
Tssr44980	transcription start site region 44980	851 bp downstream
Tssr44981	transcription start site region 44981	917 bp downstream