rs47407058 SNP Detail

Summary

• ID
  rs47407058
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172185648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT GGCCTCGAAC TCAGAGATCC
  G
  CCTGCCTCTG CCTCCCAAGT GCTGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148313914	ENSMUSSNP5720241	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320618190	CHEV_2_172169228	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47407058					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172185648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	1587 bp proximal
Fam210b	family with sequence similarity 210, member B	1837 bp upstream
Rr48055	regulatory region 48055	1648 bp distal
Rr56171	regulatory region 56171	1152 bp proximal
Tssr21944	transcription start site region 21944	1851 bp upstream
Tssr21945	transcription start site region 21945	1867 bp upstream
Tssr21946	transcription start site region 21946	1900 bp upstream
Tssr27939	transcription start site region 27939	1942 bp downstream