rs47407319 SNP Detail

Summary

• ID
  rs47407319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88569439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGGCC ATTTTTAATG
  TCTCTTTCTT TCAAGCCAGC ACACAGTGAG TTTCACTATG CAATTTTTAT ACATACATAC
  CAACCTTGGT GTCTCAGGTC TAAAATTTTG CTAATTCAGG AGGCAACACG GTGCTCAGTG
  CCCCGATTCC ATTTTCACAG AATCAAGGAA ATGCACAGAA GATGGAGGAA AACAACCTGC
  R
  TTCCAAGAGG ACCAGCTCCA TCTCCCAACA AACAACTCAT TTCAGAGCCA GCATGGGAAC
  CAGAGCTGAC CCAGGACCTC GGCTGCTCTC AACCTTAATC AGAGGCAGTT CTTAAAGTGG
  GCAGCCATCC CTGGGAAAAC ACACAACCAG CTGATCAAAG AAGCACTGAG AAGAAACTAA
  GTAGGATACC AAAACGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63578365	NES17027663	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47407319					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63578365	NES17027663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88569439 () rs orientation: forward

Symbol	Name	Function Class
Brd1	bromodomain containing 1	1798 bp downstream