rs47407892 SNP Detail

Summary

• ID
  rs47407892
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:173258677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AAGACGAGGA GGAAGGATTG
  C
  AGGGGTCAGA GAGGTTAATG ACACC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146223212	ENSMUSSNP3174909	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320132473	CHEV_1_175361242	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47407892					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173258677 () rs orientation: forward

Symbol	Name	Function Class
Aim2	absent in melanoma 2	Intron
Gm70266	predicted gene, 70266	within coordinates
Rr372470	regulatory region 372470	96 bp upstream
Rr423699	regulatory region 423699	486 bp distal
Rr423700	regulatory region 423700	901 bp distal
Rr423701	regulatory region 423701	1282 bp proximal