rs47407971 SNP Detail

Summary

• ID
  rs47407971
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:6804643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGGTGGTGGT GGGGATGGGG GAGGGGGCTC ATCTCTGCCT
  GTAACTCCAG CTTTAGAGGA TCTCACATCT CCTCTGACTC CTTGGACACT CACACACATG
  S
  TACACTCTCA CACAGACAAA CCACCAATTC ACAAACATCC ATAAAAATAA ACCTTTGGGA
  AAAAAAACTT CTGAATAAAA TATGAAACTA ACTGTAGAGG C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147788392	ENSMUSSNP3379088	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47407971					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:6804643 () rs orientation: forward

Symbol	Name	Function Class
Rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	Intron
Rr511178	regulatory region 511178	293 bp distal
Tssr136955	transcription start site region 136955	71 bp downstream