rs47408427 SNP Detail

Summary

• ID
  rs47408427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91338215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCTTCC TGGAGCTACG
  TGGCTCTTGA GTGTCTGTCT GTCCTCTCCC TTGGCTGTGG GGACTCTCTG GTTCTCCACC
  TCCGTCAGTG TCTTTGTGGA ACAGTGTTGC GCATGCGTTG GAGATTCTTG CTCTGGTGTC
  TCAGCACTGA GCTGGGGTGG CCAGGGAGCT CTCCTGTTGT CTTCAGTTCA TTCTTCTGAG
  W
  CCATGAGCGT TGCTGTGGTA ACCAGTACTA TCTGTCAGTG GAGAAGCTGT GTCTGTGGTT
  GTATCCATAG GCACCAGCCA GCTCCAGTAT GCTGCAACCC TTAAAACAAG CCGTCCTCTT
  GTCTCCAGGT CCTCACCTCT GATGCCCTCC TGAGCCTTCA GGCATCAATT CTTAGTCACC
  AAGTCCTAAC CATGTGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908892	NES16221056	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47408427					SNP	A	A	A	A	A	A	T	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908892	NES16221056	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91338215 () rs orientation: forward

Symbol	Name	Function Class
Gm67851	predicted gene, 67851	within coordinates
Rr634456	regulatory region 634456	850 bp distal
Rr634457	regulatory region 634457	within coordinates