rs47408626 SNP Detail

Summary

• ID
  rs47408626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122798051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTGTCA GCTGAGTATG
  AGTTCATAGA CATTTCCAGG AATGGAAGAA ACCTAATATT GAATAGAGGG TTGTTTCTTC
  ATGTCCTACA TAATCTTAAG AAAAGTCACT TAAGAGTCTC TTAAATGAAA AATGTTTATG
  AGATTAGGGA GTAATGCTTT ATAATTGACA CAGTTAATTG CTGTGTTTTT AGGGACTGAA
  R
  GAAAAATATC TATGAGCATA TAAATTAGGA ATCGGGACAT AATTGGAGTA ATCTGATAAA
  TTTCAATTTC ATTAAAATAG TGACTCACAA ATGGTAATAA AACACAGAAT GCAGAAGAGA
  ATATGATTTG ATTTTTAAGG TTAAGATGAA CAAAAATTTG GTATGGTAGA AGTCTAATGA
  CTTATCACAA ATGCCAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60443522	NES15944089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47408626					SNP	G	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60443522	NES15944089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122798051 () rs orientation: forward

Symbol	Name	Function Class
Myoz2	myozenin 2	1804 bp downstream