rs47408859 SNP Detail

Summary

• ID
  rs47408859
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115634811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AGAAACAATC CCAGAGGGCT
  G
  AACTGAAGCC TGGAGATGTT GAAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145720561	ENSMUSSNP4950387	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47408859					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115634811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19604	CpG island 19604	784 bp distal
Rr654130	regulatory region 654130	1038 bp proximal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Tssr74379	transcription start site region 74379	1952 bp upstream
Tssr74380	transcription start site region 74380	1754 bp upstream
Tssr74381	transcription start site region 74381	1681 bp upstream
Tssr74382	transcription start site region 74382	1238 bp upstream
Tssr74383	transcription start site region 74383	1159 bp upstream
Tssr74384	transcription start site region 74384	1033 bp upstream
Tssr74385	transcription start site region 74385	957 bp upstream