rs47408961 SNP Detail

Summary

• ID
  rs47408961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172197258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC CTACCCCTGA CTTTCTACCA
  Y
  GTGGTAGATG AGACCAGCCC CTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009851	PARCsnp_1.19004	PARC_SEQ	INBRED	f	SNP	C	T
ss120013139	PARCsnp_1.08837	PARC_SEQ	INBRED	f	SNP	C	T
ss146189518	ENSMUSSNP5757713	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320124586	CHEV_1_174299822	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs47408961					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172197258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	235 bp distal
Cpgi1046	CpG island 1046	93 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	702 bp distal
Tssr10190	transcription start site region 10190	782 bp upstream
Tssr10191	transcription start site region 10191	993 bp upstream
Tssr10192	transcription start site region 10192	1173 bp upstream