rs47411277 SNP Detail

Summary

• ID
  rs47411277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119011138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTAGGG TAACTTTGGT
  TCGCCTCCTC CCGAGGTTCG TGCATCGGAT ACACACTCCT TTCGAGGCGA CTCCTAGGGA
  TTGTGCTTGC CCCGTAGCCC AGTGCCTTAG CCGGGAGGAG GGGGGGCGGG AAGAGCCATT
  CGGTTCAGCC GGCAGCCGGG CTGGGAGAGG CCGGAGCTGG CATCACTGAC TTCCCGGGGC
  R
  CTCGTCCTCT CTTCGCCCAG CTCGGCTGGC GAGCTGCAAG GCGCCTCCCG CCAGCGGATC
  TCCGCAGCCC GGCTGCTGCT GTCTTTCAAA GCAAGGCGCC CGCCGCTCCG GCTTTGGGGT
  CTTCCGGCTC TCCAGCTCCG GGCTGAAAGG GGCCTGAGCA CGATCCCCGG TCTCCTCTGC
  ATAGCGCAGG CCCACTACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60667034	NES16246330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47411277					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60667034	NES16246330	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119011138 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	within coordinates
Cpgi21109	CpG island 21109	within coordinates
Rr382714	regulatory region 382714	1222 bp upstream
Tssr79649	transcription start site region 79649	797 bp downstream
Tssr79650	transcription start site region 79650	781 bp downstream
Tssr79651	transcription start site region 79651	766 bp downstream
Tssr79652	transcription start site region 79652	735 bp downstream
Tssr79653	transcription start site region 79653	661 bp downstream
Tssr79654	transcription start site region 79654	632 bp downstream
Tssr79655	transcription start site region 79655	596 bp downstream