rs47411740 SNP Detail

Summary

• ID
  rs47411740
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45227857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATGCTCCT CATTCTGTAG CTGTGCACTT TGTGAGCACA
  TAGATAAATT CAGTAACAGC TGGAACATCT CAGGGATGAG GGAAAAGGTT GCTTGGGGAA
  S
  TGAGGCAGGG CCAGGATAGA AACATGGGTG TTGCTCAGTT AGAGGCAGCA TTGACAGTGA
  GATCTGAAAT AAATGCTGAG CTGCTAAAGC CTAATGTGGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62358648	NES17228893	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47411740					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358648	NES17228893	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45227857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	548 bp distal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	514 bp upstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491041	regulatory region 491041	70 bp distal
Tssr4380	transcription start site region 4380	1588 bp upstream
Tssr125201	transcription start site region 125201	1928 bp downstream
Tssr125202	transcription start site region 125202	1789 bp downstream
Tssr125203	transcription start site region 125203	1728 bp downstream
Tssr125204	transcription start site region 125204	1481 bp downstream
Tssr128221	transcription start site region 128221	721 bp upstream
Tssr128222	transcription start site region 128222	530 bp upstream
Tssr128223	transcription start site region 128223	474 bp upstream